metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data

metageni/SUPER-FOCUS Issues

Databases not available anymore for download
Closed 5 months ago1
output
Updated 7 months ago1
database issue
Closed 8 months ago4
Could not concatenate clusters at level 90
Closed 8 months ago3
diamond v2.0.xx
Closed 2 years ago3
Can´t download databases
Closed 2 years ago5
not enough values to unpack error
Closed 4 years ago5
can't download database
Closed 2 years ago9
Conda install does not properly bundle db dir
Closed 2 years ago2
version doesn't work
Closed 2 years ago4
superfocus_downloadDB: Error opening database file
Closed 3 years ago9
single-file query no longer working?
Closed 3 years ago1
conda install can't find database_PKs.txt
Closed 3 years ago
smaller downloadDBs
Closed 3 years ago13
superfocus_downloadDB
Closed 3 years ago
Functional abundance and discrepancy between Subsystem 2 and 3
Closed 3 years ago3
Please, help => ValueError: not enough values to unpack (expected 2, got 0)
Closed 3 years ago1
[new release - features] SUPER-FOCUS 0.37
Closed 4 years ago
Non UTF-8 characters in the your database creating parsing errors
Closed 4 years ago4
_csv.Error: field larger than field limit (131072)
Closed 4 years ago3
"FOCUS is not avaliable on this version"
Closed 4 years ago4
Description on functional profiles
Closed 4 years ago1
superfocus_downloadDB -i is required
Closed 4 years ago1
Superfocus normalization?
Closed 5 years ago2
Re-run super-focus using existing alignments
Closed 5 years ago1
superfocus_downloadDB
Closed 5 years ago19
amino acid sequences
Closed 5 years ago10
Issues with Excel-based output
Closed 5 years ago2
rapsearch database cannot open
Closed 5 years ago2
Database error: BLAST and Diamond
Closed 5 years ago14
IsADirectoryError: [Errno 21] Is a directory: '/home/mdimdadi/14777R/FastQ/Passed_Reads/14777x5/5_superfocus_output'
Closed 5 years ago11
What kind of normalization does SUPER-FOCUS perfom?
Closed 5 years ago2
Allow `Alternate directory for your databases` same way as done on FOCUS
Closed 5 years ago
[feature] Add check for database before running based on aligner and cluster choice
Closed 5 years ago
[feature] change -n 0/1 to only -n using `action='store_true'`
Closed 5 years ago
Very very large .m8 temporary files
Closed 5 years ago5
UnboundLocalError: local variable 'temp_results' referenced before assignment
Closed 5 years ago2
[feature] Add -v parameter to print program version
Closed 5 years ago1
[Feature] Add to SUPER-FOCUS the option output reads assignment
Closed 5 years ago1
Error when running download_DB command - wget command
Closed 5 years ago3
Concatenating arrays
Closed 5 years ago
divide by zero error
Closed 6 years ago
Empty results crashes focus
Closed 6 years ago1
Repository license
Closed 6 years ago1
R duplicated levels
Closed 6 years ago1
multiple files NameError: name 'dbdir' is not defined
Closed 6 years ago1
Joining files makeblastdb error 803.7
Closed 6 years ago3
"Uncompressing db failed" superfocus_downloadDB.py blast
Closed 6 years ago1
Database not found
Closed 6 years ago2
Slow DB download
Closed 6 years ago2