Database not found
blancaverag opened this issue · comments
I am having some issues trying to run SUPER-FOCUS.
I get this error when running it, despite having the databases:
python superfocus.py -q prot.faa -dir superfocus_smo/ -o smo -ml 50 -p 1 -a diamond -fast 1
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
-diamond DB_98 database was not found. Please first run python superfocus__downloadDB.py diamond or choose a DB which exists
I have already tried to rerun superfocus__downloadDB.py and specifically set another database with -db option without luck.
Any idea of what the issue might be?
Thank you in advance
It seems to be working with rapsearch. Do I need to set something related to the database differently so I can use diamond?
Do I need to set something related to the database differently so I can use diamond?
No, installing the aligner should be all you need.