metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data

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R duplicated levels

ehj000 opened this issue · comments

Hi,
First of all thanks for a very nice tool.

I am not able to run superfocus_plots.sh on the sample files that are provided with the tool. It seems to be issues with the duplicated levels in factors in R:

[2017-08-29 21:08:57] Starting plotting scripts!
[2017-08-29 21:08:57] Note: verbose flag was not set.
Error in levels<-(*tmp*, value = if (nl == nL) as.character(labels) else paste0(labels, :
factor level [15] is duplicated
Calls: factor
Execution halted
./superfocus_plots.sh: line 107: error: command not found
[2017-08-29 21:09:00] Completed!

Is there a solution to this?
Kindly regards
Erik Hjerde

Sorry. SUPER-FOCUS does not support the scripts for plotting anymore