Luiz Irber's repositories
2017-recomb
Poster presented at RECOMB 2017
fastqstream
A Stream transform for parsing FASTQ files into records.
sourmash-node
[DEPRECATED] a proof-of-concept implementation of sourmash in JS. Current NPM package is built from https://github.com/luizirber/sourmash-rust using wasm-bindgen.
2017-jgi-download
Downloading files from JGI using the API
2018-desertos
Este notebook é um versão da análise deste artigo http://trasel.com.br/usando-sql-lite-para-encontrar-os-desertos-de-noticias-no-brasil/ usando Pandas.
2018-rust-blocks
Example for a problem I was having with borrowing, and questioning if the answer is the correct one.
bug-free-happiness
Example repository for UCSC workshop
dask-jobqueue
Deploy Dask on job schedulers like PBS and SLURM
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
neural-net-study-group
Having fun trying to implement some of the stuff we learn
pelican-ipynb
Pelican plugin for blogging with Jupyter/IPython Notebooks
pstats-view
An Interactive, Graphical, Diffable PStats Viewer for IPython Notebook
scipy_proceedings
Tools used to generate the SciPy conference proceedings
Slides-SciPyConf-2018
A repository for public storage of slides given at the 17th Python in Science Conferences (2018)
test_datasets
download small testing datasets useful for assessing tool functionality, e.g. jaccard similarity over species at increasing evol. distances
tqdm
Add a progress meter to your loops in a second
voc
A transpiler that converts Python code into Java bytecode
WGBS_Tools
Tools for working with WGBS data