luizirber

covalent

Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.

scidataflow

Command line scientific data management tool

wgatools

Whole Genome Alignment Tools

datavzrd

A tool to create visual HTML reports from collections of CSV/TSV tables

cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

runix

dask-polars

Coming soon

minimap2-rs

Rust bindings to minimap2 library

webassembly

A repo to track the progress of Python on WebAssembly (WASM)

genome-grist

map Illumina metagenomes to genomes!

pa-bench

Benchmarking pairwise aligners

PTRHash

PTRHash minimal perfect hash function, based of PTHash

YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome

roaring-landmask

A fast and memory-limited landmask based on GSHHG for determing whether a point on Earth is on land or in the ocean.

piscem

Rust wrapper for the next generation (still currently in C++)

pufferfish2

piscem-infer

sourmash_plugin_branchwater

fast, multithreaded sourmash operations: search, compare, and gather.

mazu

A Rust library for building modular, fast and compact indexes over genomic data

jam-rs

Just another minhash implementation.

2020-paper-sourmash-gather

Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.

branchwater

Searching large collections of sequencing data with genome-scale queries

nd

streamed blob manipulator

bio-streams

Streaming iterators for bioinformatics data

kmer-ology

mason3

Mason read simulator version 3 (with 100% more emojis and Rust)

in_place_fastx

f2sz

dd-wrt-wol

Wake On Lan over the internet without port forwarding

sourmash-minimal-feedstock

A conda-smithy repository for sourmash-minimal.