luizirber

2018-python-rust

This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

sourmash-rust

Rust implementation of sourmash core functionality

2018-sms

Poster and talk presented at Bioinformatics for the Microbiome Symposium at Stanford on 2018-09-24

bosun

Bosun is a runtime environment for BESM and associated models. It is used to document and automate the tasks related to running a climate model (prepare inputs, compile the code, run the model, archive the results). It is based on Fabric and can be used as a library or CLI.

bioinfo

Bioinformatics scripts

resume

An elegant Markdown -> PDF/HTML resumé generator

2018-biods

Poster presented at the 2018 Biological Data Science conference

AstrobioMike.github.io

Site to help biologists wade their way into bioinformatics.

avocado

Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.

awesome-ipfs

Useful resources for using IPFS and building things on top of it

binderhub

Deterministically build docker images from a git repository + commit

BioData

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

bonsai

Bonsai: Fast, flexible taxonomic analysis and classification

brooksph.github.io

Personal website

container-tree

testing creating graphs that represent container file systems

counter-rs

Simple object to count Rust iterables

DoveParentsRNAseq

Characterizing the neurogenomics of parental care in the rock dove

hulk

Histosketching Using Little Kmers

hypercore-py

kipoi

Kipoi's model zoo API

lisa-blog-test

nthash_bug

nthash_perf

PythonicPerambulations

A port of jakevdp.github.com to the Pelican platform

sebastian

symbolic music analysis and composition library in Python

shrek

what shrek does

sorted_set_nif

Elixir SortedSet backed by a Rust-based NIF

sourmash-ffi

Organizing notes and experiments around using sourmash in other languages (beside the supported one, Python).

sourmash-r

An experiment on wrapping sourmash Rust code and calling it in R

sourmash_gather_perf