Lukas Weber's repositories
HDCytoData
Data package containing high-dimensional cytometry data sets in SummarizedExperiment and flowSet formats
snp-dmx-cancer
Reproducible code for workflow and evaluations in our paper evaluating genetic variation-based demultiplexing tools in cancer
nnSVG-analyses
Scripts to reproduce analyses and figures in nnSVG paper
cytometry-perplexed
R scripts to generate figures in our paper Liechti et al. (2021)
STexampleData
Collection of spatially resolved transcriptomics datasets in SpatialExperiment R/Bioconductor format
WeberDivechaLCdata
Data package containing single-nucleus and spatially-resolved gene expression data from the human locus coeruleus (LC)
BRISC-extensions-analyses
Examples and documentation for our proposed extensions to BRISC for spatial transcriptomics data
bulk-gene-counts-HGSOC
Scripts for bulk RNA-seq gene count tables for HGSOC project
dmx-HGSOC-Dec2020-samples
Code to run demultiplexing on HGSOC samples from December 2020
list-of-papers
List of papers I am reading
lmweber.github.io
Code repository for my website
OSTAWorkshopBioc2021
Repository for OSTA workshop at Bioc2021 conference
performant-statistical-computing
Course webpage for Performant Statistical Computing and Algoware Development
seminar-slides
PDF backups of current seminar slides
SpatialExperiment-figures
Code to generate figures for SpatialExperiment paper
spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
spkmedoids
R package implementing spatially weighted k-mediods algorithm
SVGs-exploratory
Exploratory analyses for nnSVG project (spatially variable genes)