lmweber

Lukas Weber's starred repositories

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

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umap

Uniform Manifold Approximation and Projection

Language:PythonBSD-3-Clause7396 127 786

r-color-palettes

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

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genomicspapers

The Leek group guide to genomics papers

467 69 1

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

Language:R265 8 247

deep-learning-genomics-primer

Contains files for the deep learning in genomics primer.

Language:Jupyter Notebook260 8 4

bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

252 43 5

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

Language:PythonMIT240 9 26

awesome_spatial_omics

tools and notes for spatial omics

228 15 1

TeachingMaterial

Various teaching material

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notebook

Collection of jupyter notebooks for demonstrating software.

Language:Jupyter NotebookBSD-3-Clause163 41 18

umap

Uniform Manifold Approximation and Projection - R package

Language:RNOASSERTION132 8 21

qvalue

R package to estimate q-values and false discovery rate quantities.

Language:R109 8 32

swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Language:RBSD-3-Clause103 5 28

2015-02-23_bryan-fields-talk

Talk at Workshop on Visualization for Big Data: Strategies and Principles, Fields Institute http://www.fields.utoronto.ca/programs/scientific/14-15/bigdata/visualization/

34 140