Lukas Weber's repositories
cytometry-clustering-comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Rtsne-example
Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
FlowSOM-Rtsne-example
Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne
benchmark-data-Levine-32-dim
R code to prepare 32-dimensional CyTOF benchmark data set from Levine et al. (2015), for testing high-dimensional clustering algorithms
PD1_analysis_CellCnn
Code to run CellCnn analyses in collaboration paper by Krieg et al. (2018), Nature Medicine
CyTOF-workshop-2017-07-10
Information and teaching materials for CyTOF workshop (R sessions), University of Zurich, 10-12 July 2017
benchmark-data-Levine-13-dim
R code to prepare 13-dimensional CyTOF benchmark data set from Levine et al. (2015), for testing high-dimensional clustering algorithms
clustermatch
R package for matching detected clusters to true clusters and evaluating performance
glmnet-error-example
Reproducible example to demonstrate possible bug in glmnet version 2.0-2
Jackson-periodontal-disease
Code and data to reproduce statistical analysis in Jackson et al. paper on equine periodontal disease
useful-commands
Collection of useful commands and keyboard shortcuts for Mac and Linux
2016-05-30-Zurich
Website for Data Carpentry workshop, University of Zurich, 30-31 May 2016
conference-slides-and-posters
Conference presentation slides and posters presented during my PhD
CrispantCal
R/Shiny web app to calculate CRISPR-Cas9 injection mix volumes
CyTOF-workshop-2017-03-13
Information and teaching materials for CyTOF workshop (R sessions), University of Zurich, 13-15 Mar 2017
latex-templates
LaTeX template for preprints and supplementary information documents
r-novice-inflammation
Software Carpentry introduction to R for novices using inflammation data.
R-packages-build-commands
Pipeline of commands for building and checking R packages
training-prep-2015-09
Instructor training preparation, September 2015
workshop-template
Template for workshop websites.