lmweber / dmx-HGSOC-Dec2020-samples

Code to run demultiplexing on HGSOC samples from December 2020

dmx-HGSOC-Dec2020-samples

Contents

Code to run demultiplexing pipeline on our set of HGSOC samples from December 2020. The demultiplexing pipeline uses bcftools, cellSNP, and Vireo.

Samples

This dataset contains bulk RNA-seq samples from 4 individuals:

• 18431X4
• 18431X5
• 18431X6
• 18431X7

And 2x pooled single-cell RNA-seq samples, each containing cells from all 4 individuals:

• 18389X2
• 18389X3