Giters
kipoi
/
models
Model zoo for genomics
Home Page:
http://kipoi.org
Geek Repo:
Geek Repo
Github PK Tool:
Github PK Tool
Stargazers:
161
Watchers:
20
Issues:
103
Forks:
58
kipoi/models Issues
Can not create env after installing kipoi
Closed
9 months ago
`kipoi test-source dir --all` not finding parent_subpath
Updated
a year ago
Meaningful deepSEA/predict column names not output
Updated
2 years ago
Test predictions are not available for a subset of models in Kipoi
Updated
2 years ago
Comments count
1
KipoiSplice is not getting tested in ci
Updated
2 years ago
Review APARENT predictions
Updated
2 years ago
APARENT - number of predictions seems off
Updated
2 years ago
Comments count
3
DeepSEA model doesn't support variant effect prediction
Closed
3 years ago
Comments count
1
SeqVec environments resolve everywhere except in circleci nightly test
Closed
3 years ago
Comments count
5
Frequent zenodo outage
Closed
3 years ago
Comments count
1
Parallelize CI
Closed
3 years ago
DeepSEA test error
Updated
3 years ago
Comments count
5
DeepCRISPR
Updated
3 years ago
Add width requirement to bed_file description
Updated
3 years ago
Comments count
1
update licenses
Updated
3 years ago
SiSp model have some problem:Could not load .tbi/.csi index of example/meth_file
Updated
3 years ago
rbp_eclip models do not accept files without 'chr' string
Updated
3 years ago
Comments count
4
I am trying to get the MMSplice model but it show error
Updated
3 years ago
nightly tests fail
Closed
3 years ago
Comments count
1
DeepBind model doesn‘t exit
Closed
3 years ago
Comments count
3
SeqVec example doesn't work
Closed
3 years ago
Comments count
2
Framepool unclear file names
Updated
3 years ago
Comments count
1
Discrepancies between nightly tests and examples on local machine.
Updated
3 years ago
Implement Batch size restrictions
Updated
3 years ago
Comments count
1
Split models into separate repositories
Updated
3 years ago
Possible to run Basenji with GPU?
Updated
3 years ago
Comments count
3
Framepool seems to miss required "biopython" package in environment.yml
Closed
3 years ago
Comments count
2
Framepool can't handle deletions such as "AT"->""
Updated
3 years ago
Comments count
4
KipoiSplice/4 fails to run inside conda environment created with python 3.6
Closed
4 years ago
Comments count
7
CleTimer/default is failing
Closed
4 years ago
kipoi env create BPNet-OSKN does not work anymore
Closed
4 years ago
KipoiSplice/4 predict_example code will not work on machines where the user does not have write permissions to /tmp/
Updated
4 years ago
Comments count
1
DeepBind model doesn't exist
Closed
5 years ago
A error of Basenji's example :ValueError: Cannot feed value of shape (10, 131072, 4) for Tensor 'inputs:0', which has shape '(2, 131072, 4)'
Closed
5 years ago
Comments count
8
MMSplice error and general kipoi questions
Closed
5 years ago
Comments count
33
Fine-tune Basset from kipoi/models on a new dataset?
Closed
5 years ago
Comments count
1
How do I delete the environment created by `kipoi env`?
Closed
5 years ago
Comments count
2
Variable `gtf` not found
Closed
5 years ago
Comments count
3
FactorNet example file 404
Closed
6 years ago
Comments count
1
PyTorch 1.0 compatibility
Closed
6 years ago
Comments count
1
Allow to specify a default subset of the columns for the writers
Closed
6 years ago
Comments count
1
Include all manuscript authors as model authors
Closed
6 years ago
Comments count
1
Exception message in kipoi test not clear
Closed
6 years ago
Comments count
6
`kipoi test` doesn't work with "templated" models
Closed
6 years ago
Comments count
5
Update `license` for DeepSEA to creative commons
Closed
6 years ago
Comments count
1
Use lsgkm-SVM from kipoi/models on new data
Closed
6 years ago
Comments count
6
ls-gkmsvm model does not load
Closed
6 years ago
Comments count
16
Specifying targets in DeepSEA
Closed
6 years ago
Comments count
8
Remove DeepSEAKeras
Closed
6 years ago
Comments count
1
ParseResult problem when importing
Closed
6 years ago
Comments count
2
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