Kipoi

kipoi

Model zoo for genomics

Kipoi's repositories

kipoi

Kipoi's model zoo API

Language:Jupyter NotebookMIT231 23 319

models

Model zoo for genomics

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kipoiseq

Standard set of data-loaders for training and making predictions for DNA sequence-based models.

Language:PythonMIT76 15 37

examples

A repository to host extended examples and tutorials.

Language:Jupyter NotebookMIT11 8 2

manuscript

Code for the Kipoi manuscript

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kipoi-veff

Variant effect prediction plugin for Kipoi

Language:Jupyter NotebookMIT6 11 23

website

http://kipoi.org

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kipoi-interpret

Model interpretation plugin for Kipoi

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kipoi-containers

This repository contains necessary infrastructure elements for automatically adding and updating docker and singularity images for models and model groups in Kipoi model zoo. These images are pre-activated with a compatible conda environment where all the model (group) specific dependencies have been installed.

Language:PythonMIT2 3 26

kipoi-veff2

Variant effect prediction with a subset of models in Kipoi

Language:PythonMIT2 11 13

kipoi.github.io

kipoi.org

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demo-webapp-frontend

React app for demo webapp

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kipoi-utils

utils used in various packages related to kipoi

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kipoi-webapp-backend

Backend app running on Flask for Kipoi webapp

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kipoi-webapp-router

Router for Kipoi webapp (routing between Kipoi environments)

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kipoi-conda

conda and pip related functionality for the kipoi project

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pydoc-markdown

Create Python API documentation in Markdown format.

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