Kieran R Campbell's repositories
clonealign
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
r-workshop-march-2019
R workshop on single cell genomics at BC Cancer March 2019
scrnaseq-digestion-paper
BC Cancer single-cell RNA-seq digestion method paper
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
camlab-website
Hugo website for camlab Toronto
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
ouija-paper
Reproducible analysis for Ouija paper
clonealign-pipeline
A pipeline to process scRNA-seq (10X chromium) and scDNA-seq CNV data and infer clone-specific expression using clonealign
latex-paper-template
Latex template for writing papers
old-cellassign
Probabilistic assignment of single-cell RNA-seq to known types
scangen-website
Website for single-cell cancer genomics workshop at ISMB2018
standR
Spatial transcriptomics analyses and decoding in R
stat-genomics-docker
Docker file for statistical genomics (single-cell focus)
tcga-gene-dosage
A Nextflow pipeline for identifying gene dosage effects from TCGA