kieranrcampbell / scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper

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Reproducible analysis for Dissociation of solid tumour tissues with cold active protease for single cell RNAseq minimizes conserved collagenase-associated stress responses

Directory structure

Directory Purpose
data Storage of raw & processed data
data/deliverables Deliverable components incl. core gene set
docker Storage of docker image
figs Intermediate & final figures
latex Latex files of summary statistics and supplementary tables
pipeline All R, RMD, and Snakefiles to generate results
reports Output reports from some RMarkdown builds
scripts Auxilliary helper scripts

Docker

statgen2:0.4

Version release

Version Notes
v1.0 Initial paper preprint & submission

Authors

Kieran R Campbell

About

BC Cancer single-cell RNA-seq digestion method paper


Languages

Language:R 72.2%Language:TeX 14.8%Language:Python 13.0%