Kim Ferguson's starred repositories
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
quickmerge
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
ddRADseqTools
Software package for in silico simulation and testing of double digest RADseq experiments.
multifastats
Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/or type. This runs in Windows, Linux and Mac OS.
SparseAssembler
A sparse k-mer graph based, memory-efficient genome assembler.