isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/racon

isovic/racon Issues

Racon gives empty output (fasta file)
Updated 13 days ago3
Indels around the limit of the window
Updated 15 days ago1
error: unequal lengths in sequence and overlap file for sequence 2525deca-ece8-4652-8429-19ca02a0aeca!
Updated 8 months ago1
racon: invalid option -- 'L'
Updated 9 months ago2
error: overlap is not transmuted!
Updated a year ago6
Segmentation Fault (core dumped)
Updated a year ago1
error: overlap is not transmuted!
Updated a year ago
polishing contig with Nanopore Q20 read?
Closed a year ago1
Use cDNA to polish exons
Closed a year ago
Racon cannot work with duplucates in paf file
Updated a year ago1
How to generate OVERLAP file?
Closed a year ago1
Empty Output (non-memory-related issue)
Closed a year ago3
installation on CentOS 7: 'Could NOT find ZLIB: Found unsuitable version "1.2.7", but required is at least "1.2.8"'
Closed a year ago1
Compiling RACON for CUDA 11.4 & <$ make package> FAILS on Ubuntu 18.04 - SOLVED
Closed a year ago
Racon error: empty overlap set!
Closed a year ago
VERY slow performance with fastq.gz files
Closed a year ago3
unequal length error
Updated a year ago1
Improper
Updated a year ago1
terminate called after throwing an instance of 'std::invalid_argument' what(): [bioparser::SamParser] error: invalid file format
Updated a year ago1
Output record of fixes
Updated a year ago1
Issue with some files resulting in "overlap is not transmuted"
Closed 2 years ago3
Empty Output file when using Racon
Updated 2 years ago7
error:Overlap not computed
Updated 2 years ago5
error: empty overlap set! and multiple consusnses sequnces
Updated 2 years ago6
Build error in CUDA support
Updated 2 years ago2
Invalid dumped,
Updated 2 years ago2
The number contig decrease after polishing
Updated 2 years ago1
How to get a consensus as output?
Updated 2 years ago
Does polishing with Racon requieres generation of new .sam files?
Closed 2 years ago1
how to resolve overlaps?
Updated 2 years ago1
error: unable to find subsampled sequences!
Updated 2 years ago
error: overlap is not transmuted!
Updated 2 years ago7
warning: contig XXX might be chimeric in window XX!
Updated 2 years ago
canu polishing with CLR reads
Updated 2 years ago1
No polished contigs despite ~50X coverage
Updated 2 years ago5
error: overlap is not transmuted!
Updated 2 years ago2
error: overlap is not transmuted!
Closed 2 years ago6
out of memory and not producing output
Updated 2 years ago3
racon creates empty output with small input files
Updated 3 years ago3
Racon_wrapper got an error about file format.
Closed 3 years ago3
Segmentation fault
Updated 3 years ago1
Does a log file that is too large have an impact?
Updated 3 years ago2
empty output file!
Closed 3 years ago7
How to obtain Contigs from cDNA Nanopore Sequencing
Closed 3 years ago
CUDA automatically enabled when Build with -Dracon_enable_cuda=ON
Closed 3 years ago6
Github Releases?
Closed 3 years ago2
Segmentation faults related to input PAF file
Closed 3 years ago15
Empty overlap set!
Updated 3 years ago4
Is racon can extent a sequence ?
Updated 3 years ago1
--output option?
Closed 3 years ago4