marbl / canu

A single molecule sequence assembler for genomes large and small.

http://canu.readthedocs.io/

marbl/canu Issues

Recommendations in plant genome
Closed 5 hours ago2
Undefined subroutine &canu::Report::caExit called" during CANU Assembly
Updated a day ago2
HERRO corrected ONT with trio data
Closed 2 days ago1
Read correction does not produce any output
Closed 2 days ago11
How to install canu
Closed 16 days ago13
Canu Exit code 1, sqStoreCreate failed; boom!.
Closed 18 days ago4
ONT targeted long-read sequencing trimmed data error correction issue
Closed 23 days ago8
Abnormal error
Updated 23 days ago2
Failed to open meryl.WORKING/0x110101[025].merylData for reading: Too many open files
Closed 24 days ago1
ERROR : Failed to find the number of jobs in 'unitigging/0-mercounts/meryl-count.sh'. 2.3dev
Closed 24 days ago2
Failed to submit compute jobs
Closed a month ago3
Illegal division by zero..... Execution.pm line 1441
Closed a month ago2
assembly overlapped amplicon data, where to find contained reads
Closed a month ago1
Strange Error
Closed a month ago3
Canu failed when I ran on the HPC
Closed a month ago2
HiCanu failing for real world HiFi data
Closed a month ago4
canu issue
Closed 2 months ago2
200x coverage job stuck at 1-overlapper with "Pathname of a file, directory or other parameter too long"
Closed 2 months ago7
ovStoreDump command
Closed 2 months ago2
Read coverage (0) lower than allowed. minInputCoverage = 10. Help me boss
Closed 2 months ago4
Canu v.2.2: Failed to generate corrected reads!
Closed 2 months ago4
no Corrected reads created
Closed 2 months ago10
More reads in output than reads in input
Closed 2 months ago2
Something goes wrong when I use canu. Help me plz
Closed 3 months ago2
Error to launch Canu v2.2 in grid. sqStoreCreate failed; boom!.
Closed 3 months ago4
Canu error: CRASH: Failed to submit compute jobs. CRASH: qsub: Failed to route job to queue interactive
Closed 3 months ago9
sqStoreCreate failed. Failed with exit code 1. (rc=256)
Closed 3 months ago4
*.contigs.layout.readToTig file
Closed 3 months ago3
grid options, meryl-count and disk quota
Closed 4 months ago4
how to regenerate the readNames.txt
Closed 4 months ago2
Question: parameters for better quality data
Closed 4 months ago1
How much storage space is required for the assembly of a large genome species?
Closed 4 months ago1
Possible problem with consensus step
Closed 4 months ago1
Canu fails due to missing time limit specification
Closed 4 months ago2
Overlapper step failed twice
Closed 4 months ago10
Error: Could not establish configuration source
Closed 4 months ago1
reads overlap file
Closed 4 months ago1
Runing canu in conda environment in HPC, which one is the assembly contig file I that I should get?
Closed 4 months ago3
Bogart BestOverlapGraph::removeLopsidedEdges
Closed 5 months ago1
reads correct with different depth but same results
Closed 5 months ago6
Will Canu read correction reduce true variation for strain-typing ONT reads?
Closed 5 months ago2
how to get only one contig by setting the parameter?
Closed 5 months ago2
About the memory space and script
Closed 5 months ago2
Canu can't continue where it left off after shutdown
Closed 6 months ago14
some canu contigs are in reverse
Closed 6 months ago4
Correction step parameters
Closed 6 months ago1
Bogart Failed, Unknown Options Error
Closed 6 months ago2
ERROR: Invalid command line option 'barcode06.fastq.gz'. Did you forget quotes around options with spaces?
Closed 7 months ago7
CANU & Nextflow & SLURM
Closed 7 months ago5
ctgStore not created in a subset of samples
Closed 7 months ago9