Kelly Sovacool's repositories
snakemake_hpc_mwe
A minimal working example of using Snakemake on an HPC running PBS-torque or SLURM.
tiger_salamander_project
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
bioconda-recipes
Conda recipes for the bioconda channel.
bioinf603-fall2019
Presentation for BIOINF 603: Journal Club
build-tidy-tools
Materials & my notes from Building Tidy Tools workshop at rstudio::conf(2020)
CluMSID
Fork of CluMSID: Clustering of MS² Spectra for Metabolite Identification
code-club_stat-summary
Nick's code club on using stat_summary with ggplot2
code_club_gsheets_2020-03
Pat's code club: intro to the googlesheets4 R package
foofactors
Practice from Building Tidy Tools workshop at rstudio::conf(2020)
handmade-plots
Attempting to make plots look like they were drawn by hand
jupyter-ci-mwe
A minimal working example of using continuous integration to convert jupyter notebooks to PDFs.
lang-stats
Collect & plot personal programming language statistics from GitHub repos
miRNA-diff-expr
Differential expression analysis for miRNA sequence data
planets-kelly
Teaching git at Software Carpentry Workshop 2019-07-01
practice-repo
example repo for teaching git & github
prelim
My abstract, proposal, and presentation for the preliminary exam for the UMich Bioinformatics PhD program.
Rcpp.practice
Practice using Rcpp
recipes-kelly
Teaching git at WISE Software Carpentry Workshop 2020-01-07
Schloss_Cluster_PeerJ_2015
Replication study of He et al. (2015) in Microbiome by Pat Schloss & Sarah Westcott
snakemake-Rscript-log-mwe
A minimal working example of using Snakemake log files with R scripts
undergrad-comp-sci
A collection of code I wrote for assignments in computer science courses as an undergraduate student at the University of Kentucky (2014-2018).