kelly-sovacool

Kelly Sovacool's starred repositories

ruff

An extremely fast Python linter and code formatter, written in Rust.

Language:RustMIT28244 77 4584

Soundflower

MacOS system extension that allows applications to pass audio to other applications. Soundflower works on macOS Catalina.

Language:Objective-CMIT8814 4190

nextflow

A DSL for data-driven computational pipelines

Language:GroovyApache-2.02594 85 3102

seqtk

Toolkit for processing sequences in FASTA/Q formats

Language:CMIT1336 62 170

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language:JavaScriptGPL-3.01185 37 1520

zenodo

Research. Shared.

Language:PythonGPL-2.0902 43 1446

MACS

MACS -- Model-based Analysis of ChIP-Seq

Language:CythonBSD-3-Clause689 49 517

mike

Manage multiple versions of your MkDocs-powered documentation via Git

Language:PythonBSD-3-Clause498 6 177

citation-file-format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

Language:PythonCC-BY-4.0429 15 331

conventional-changelog-metahub

conventional-changelog preset

Language:JavaScriptMIT397 7 17

patterns

A curated collection of Nextflow implementation patterns

Language:NextflowMIT317 23 20

conventional-pre-commit

A pre-commit hook that checks commit messages for Conventional Commits formatting

Language:PythonApache-2.0300 4 27

giggle

Interval data structure

Language:CMIT217 20 54

ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

Language:R210 20 184

scidataflow

Command line scientific data management tool

Language:RustMIT187 1 15

bake-action

GitHub Action to use Docker Buildx Bake as a high-level build command

Language:TypeScriptApache-2.0169 10 29

nf-test

Simple test framework for Nextflow pipelines

Language:JavaMIT127 7 143

Cli2Gui

Use this module to convert a cli program to a gui

Language:PythonMIT82 3 12

pytest-workflow

Configure workflow/pipeline tests using yaml files.

Language:PythonAGPL-3.063 7 82

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

Language:RBSD-3-Clause51 11 21