kelly-sovacool

ruff

An extremely fast Python linter and code formatter, written in Rust.

Soundflower

MacOS system extension that allows applications to pass audio to other applications. Soundflower works on macOS Catalina.

nextflow

A DSL for data-driven computational pipelines

dbml

Database Markup Language (DBML), designed to define and document database structures

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

zenodo

Research. Shared.

MACS

MACS -- Model-based Analysis of ChIP-Seq

mike

Manage multiple versions of your MkDocs-powered documentation via Git

citation-file-format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

conventional-changelog-metahub

conventional-changelog preset

patterns

A curated collection of Nextflow implementation patterns

ggVennDiagram

A 'ggplot2' implement of Venn Diagram.

giggle

Interval data structure

ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

dbml-renderer

scidataflow

Command line scientific data management tool

bake-action

GitHub Action to use Docker Buildx Bake as a high-level build command

nf-test

Simple test framework for Nextflow pipelines

Cli2Gui

Use this module to convert a cli program to a gui

pytest-workflow

Configure workflow/pipeline tests using yaml files.

phantompeakqualtools

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

mkdocs-git-committers-plugin-2

MkDocs plugin for displaying a list of GitHub (.com or Enterprise) contributors on each page. Encourages contributions to the documentation!

cffr

Generate Citation File Format (cff) Metadata for R Packages

doi2cff

Generate a CFF file using the metadata from a software release on Zenodo.

cvbio

Artisanal 🤣 bioinformatics tools and pipelines in Scala

SICER2

MSPC

Using combined evidence from replicates to evaluate ChIP-seq peaks

GEM3

GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)

nf-schema

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

just-enough-python

Just enough Python for R users to write advanced Snakemake workflows