johnnytam100 / pdb2uniprot

A Python script to map PDB ID + chain ID to UniProt ID.

pdb2uniprot

This script maps pdb ID with chain ID in the input formats of 1) tab-delimited table without header OR 2) .csv to uniprot ID.

Usage examples

1) csv

python pdb2uniprot_tam.py --input pdb_chain_table.csv --pdb_col PDB_ID --chain_col CHAIN_ID

2) tab-delimited table (with header in output)

python pdb2uniprot_tam.py --input pdb_chain_table

3) tab-delimited table (no header in output)

python pdb2uniprot_tam.py --input pdb_chain_table --no_header