Joe Greener's repositories
pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
Bio3DView.jl
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
ProteinEnsembles.jl
Generate and perturb protein structural ensembles using the ExProSE algorithm
julia-anti-patterns
Learning what to do in Julia by learning what not to do in Julia
alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Backboner.jl
Types and utilities for handling backbones
BiochemicalAlgorithms.jl
The Biochemical Algorithms Library in Julia
BioFmtSpecimens
A collection of bioinformatics file format specimens to test against
BioSequences.jl
Biological sequences for the julia language
DiffEqCallbacks.jl
A library of useful callbacks for hybrid scientific machine learning (SciML) with augmented differential equation solvers
DiffEqDocs.jl
Documentation for the DiffEq differential equations and scientific machine learning (SciML) ecosystem
Enzyme
High-performance automatic differentiation of LLVM and MLIR.
Enzyme.jl
Julia bindings for the Enzyme automatic differentiator
ISOKANN.jl
Julia implementation of the ISOKANN algorithm for the computation of invariant subspaces of Koopman operators
jgreener64.github.io
My personal website
julia
The Julia Programming Language
JuliaFormatter.jl
An opinionated code formatter for Julia. Plot twist - the opinion is your own.
julialang.github.com
Julia Project web site
JuliaMolSim.github.io
The website of the JuliaMolSim organisation
OrdinaryDiffEq.jl
High performance differential equation solvers for ordinary differential equations, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
phd_thesis
My PhD thesis from Imperial College London
python-anti-patterns
An open collection of Python anti-patterns and "worst practices".
www.julialang.org
Julia Project website