UCL Bioinformatics Group

UCL Bioinformatics Group's repositories

protein-vae

Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

Language:PythonMIT79 5 2

DMPfold

De novo protein structure prediction using iteratively predicted structural constraints

Language:CGPL-3.055 7 1

cgdms

Differentiable molecular simulation of proteins with a coarse-grained potential

Language:PythonMIT52 8 1

psipred

PSIPRED Protein Secondary Structure Predictor

Language:JavaNOASSERTION50 5 11

DMPfold2

Fast and accurate protein structure prediction

Language:PythonGPL-3.047 5 7

s4pred

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

Language:PythonGPL-3.043 7 5

FFPredGAN

Improving protein function prediction with synthetic feature samples created by generative adversarial networks

Language:PythonGPL-3.020 3 2

DeepMetaPSICOV

Deep ResNet-based protein contact prediction

Language:CGPL-3.019 4 5

Merizo

Fast and accurate protein domain segmentation using Invariant Point Attention

Language:PythonGPL-3.016 5 2

domain_word2vec_scripts

The scripts for the word2vec embedding paper

Language:Python7 30

FFPred

Protein function by GO term prediction using SVMs

Language:PerlMIT2 2 1

psipred_website

The is the new psipred website.

Language:JavaScriptGPL-3.02 70

hspred

Protein-protein interaction hotspot predictor

Language:PerlNOASSERTION1 20

MemEmbed

Membrane protein orientation using knowledge-bases potentials

Language:C++NOASSERTION1 20

mempack

Membrane alpha helix packing and orientation predicrtor

Language:PerlNOASSERTION1 20

MemSatSVM

Membrane helix prediction with SVMs

Language:PerlNOASSERTION1 3 1

merizo_search

Fast structure embedding search tool for Merizo

Language:PythonGPL-3.01 30

psipred_react

A react port of the psipred_webserver dynamic pages

Language:JavaScript1 20

ted-tools

ML toolset for creating TED: The Encyclopedia of Domains

Language:CMIT1 30

analytics_automated

Middleware layer for exposing analytics and distributed computing jobs as web services

Language:PythonNOASSERTION010

ansible_config

PSIPRED server architecture ansible config and playbooks

Language:Shell030

ansible_production_config

Production version of our ansible config, which also loses all the extraneous waffle

Language:Perl02 1

ansible_rocky

new, united ansible repo for rocky machines

Language:Shell000

biod3

Protein annotation web graphics lib

Language:JavaScript020

blast_cache

PSIBLAST and BLAST cache

Language:PythonGPL-3.001 3

DMPmetal

repository for the DMPmetal metal binding site predictor

Language:Python000

psipred_branding

contains all our branding files, logos and info

020

psipred_javascript

All the javascript to run the new website (sans biod3)

Language:JavaScriptGPL-3.003 1

web_server_scripts

Web server helper scripts

Language:Python000

webserver_test_dbs

A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting

000