Giters
UCL Bioinformatics Group (psipred)

UCL Bioinformatics Group

psipred

Organization data from Github https://github.com/psipred

UCL bioinformatics group repositories

Home Page:http://bioinf.cs.ucl.ac.uk/psipred/

GitHub:@psipred

UCL Bioinformatics Group's repositories

s4pred

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

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psipred

PSIPRED Protein Secondary Structure Predictor

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cgdms

Differentiable molecular simulation of proteins with a coarse-grained potential

Language:PythonLicense:MITStargazers:56Issues:7Issues:1

DMPfold2

Fast and accurate protein structure prediction

Language:PythonLicense:GPL-3.0Stargazers:54Issues:5Issues:8

Merizo

Fast and accurate protein domain segmentation using Invariant Point Attention

Language:PythonLicense:GPL-3.0Stargazers:41Issues:5Issues:5

merizo_search

Fast protein domain structure embedding+search tool

Language:PythonLicense:GPL-3.0Stargazers:26Issues:3Issues:1

ted-tools

ML toolset for creating TED: The Encyclopedia of Domains

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disopred

Protein structural disorder prediction

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pGenTHREADER

Protein fold recognition using strucutal and sequence template threading

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hspred

Protein-protein interaction hotspot predictor

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dompred

Protein sequence domain predictor

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MemEmbed

Membrane protein orientation using knowledge-bases potentials

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mempack

Membrane alpha helix packing and orientation predicrtor

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MemSatSVM

Membrane helix prediction with SVMs

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metsite

Metal ion ligand contact predictor

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psipred_react

A react port of the psipred_webserver dynamic pages

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analytics_automated

Middleware layer for exposing analytics and distributed computing jobs as web services

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ansible_rocky

new, united ansible repo for rocky machines

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biod3

Protein annotation web graphics lib

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blast_cache

PSIBLAST and BLAST cache

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DMPmetal

repository for the DMPmetal metal binding site predictor

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GsRCL

repository for the GsRCL cell type identifier

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memsat-svm-pore

The version of memsat-svm that also predicts pore lining residues

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p53_docking

Project code for Chris Morris collab

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PFP

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profile_drift_new

update for profile drift project

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psipred_branding

contains all our branding files, logos and info

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server_update

Scripts and bits for the new server updating

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web_server_scripts

Web server helper scripts

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webserver_test_dbs

A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting

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