jeffdaily / parasail

Pairwise Sequence Alignment Library

jeffdaily/parasail Issues

Parasail install failing on M1 Pro
Updated 2 months ago4
Indexing error in alphabet_aliases
Updated 2 months ago1
figure out the similarity percentage of alignment
Updated 3 months ago
Comments/ questions about fatal flaw in gap penalties for my use cases
Closed 5 months ago2
Can DNA alignment traceback result comply with HGVS 3' rule?
Updated 6 months ago7
choosing among same-score alignments
Updated a year ago5
MAPQ should be 0 for unmapped reads
Closed 2 years ago4
segfaults when using (some) profile functions
Closed 2 years ago9
Out-of-bounds memory corruption
Closed 2 years ago
semi-global `parasail_sg_dx` not reporting `beg_ref` correctly
Updated 2 years ago
-t 24 not working threading
Updated 2 years ago21
sg_qe_de – alignment extension?
Closed 2 years ago3
Different gap penalty for template and query
Updated 2 years ago1
Kind of CIGAR
Updated 3 years ago2
Failure linking against OpenMP on macOS
Updated 3 years ago
Cross-compiling for arm64 on macOS (x86_64 host)
Closed 3 years ago4
CIGAR in Banded Global Alignment
Updated 3 years ago
configuration error on ubuntu
Closed 3 years ago4
Parasail on recent M1 Mac?
Updated 3 years ago3
parasail_aligner: NW - output all best alignments
Updated 4 years ago2
Attempt to to align an empty string appears to cause a Floating point exception
Updated 4 years ago6
install parasail on Mac
Updated 4 years ago1
Failed to build parasail on Mac OSx
Closed 4 years ago3
detection of AVX512
Updated 4 years ago1
API request: return NULL from parasail_sequences_from_file upon error?
Closed 4 years ago4
Assertion error
Closed 4 years ago2
run time of app not scaling linearly with input file length
Updated 5 years ago5
Definition of 'alignment score'
Closed 5 years ago2
Parasail-2.4 is slower
Updated 5 years ago2
License clarification
Updated 5 years ago1
Feature request: option for no gap penalty in target start and end of both target/query
Updated 5 years ago15
ld
Closed 5 years ago
Bug in CIGAR Construction
Closed 5 years ago1
MSP
Updated 5 years ago1
Question about gap open penalty for different vectorizations.
Closed 6 years ago8
Feature request: convex gap penalty
Updated 6 years ago3
T and U are treated as mismatching nucleotides.
Closed 6 years ago5
support for alphabets with more than 256 symbols
Updated 6 years ago6
support msys, mingw
Closed 6 years ago1
CMake on MacOS; OSError: dlopen(libparasail.dylib, 6): image not found
Closed 6 years ago5
Querying version of installed parasail?
Closed 6 years ago8
Question: API for getting aligned sequences, number of indels?
Closed 6 years ago7
Support for ARM64?
Closed 6 years ago19
matches between uppercase and lowercase symbols are treated as mismatches
Closed 6 years ago6
test_isa informs me that avx2 is not available, but it should be
Closed 7 years ago9
Question: does "sat" function cause the solution width to go higher than 16?
Closed 7 years ago1
Crashes of parasail_aligner running under window cause an error message box to be displayed
Closed 7 years ago15
readme.md erroneously refers to "sse4" rather than "sse41"
Closed 7 years ago
Traceback output does not get sent to file specified as argument to -g option
Closed 7 years ago3
parasail_aligner need not show any residues beyond the aligned segments when running a local alignment (SW)
Closed 7 years ago4