Giters
jeffdaily
/
parasail
Pairwise Sequence Alignment Library
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Stargazers:
241
Watchers:
18
Issues:
94
Forks:
34
jeffdaily/parasail Issues
EMBOSS and SSW style tracebacks can put sequence and match lines out-of-register
Closed
7 years ago
Comments count
14
Read results in non-parseable SAM alignment
Closed
7 years ago
Comments count
11
Reliable segmentation fault with all traceback alignments
Closed
7 years ago
Comments count
9
Segfault in sw_trace_striped_avx2_256_8
Closed
7 years ago
Comments count
2
Large Memory Consumption with Traceback
Closed
7 years ago
Comments count
11
Speedup and memory reduction of backtracing alignment
Closed
7 years ago
Comments count
2
semi-global question
Closed
7 years ago
Comments count
4
HAVE_KNC 0 for a Intel(R) Xeon Phi(TM) CPU 7250
Closed
6 years ago
Comments count
2
Ambiguous define with htslib
Closed
7 years ago
Comments count
4
Add meson build system
Closed
7 years ago
Comments count
4
strdup implicitly declared in parser.c
Closed
7 years ago
make check fails without zlib
Closed
7 years ago
It appears that the `-s` option to specify SAM is not handled by parasail_aligner
Closed
7 years ago
Comments count
4
Stop Codon Error
Closed
7 years ago
Comments count
3
Building Shared Library
Closed
7 years ago
Comments count
2
Understanding Result
Closed
7 years ago
Comments count
1
About gap extent penalty
Updated
7 years ago
Comments count
13
Question only - pairwise local alignment without gaps
Updated
8 years ago
Comments count
1
Skylake support
Closed
7 years ago
Comments count
3
Needleman-Wunsch with affine gap penalties
Closed
8 years ago
Comments count
4
DNA Substitution Matrices
Closed
7 years ago
Comments count
6
SImple DNA search
Updated
8 years ago
Comments count
2
provide Java bindings
Closed
8 years ago
Comments count
6
-O3 optimization causes incorrect results on OSX clang for _mm256_blendv_epi8
Closed
9 years ago
Comments count
1
epi64 instructions not available on 32-bit platforms
Closed
9 years ago
Comments count
1
python ctypes interface instead of cython
Closed
9 years ago
create python wheel for pip install
Closed
9 years ago
incorrect default SSE41_CFLAGS for gcc 4.4.7
Closed
9 years ago
visual studio 2010, 2012 build failure
Closed
9 years ago
Comments count
1
test_isa should also report what the compiler supported
Closed
9 years ago
Adding example for python
Closed
9 years ago
update README et al. for new citation
Closed
9 years ago
Comments count
1
provide functions that return the full traceback
Closed
7 years ago
Comments count
16
smaller memory footprint of parasail_result_t
Closed
7 years ago
Comments count
1
stats functions should be affine, not linear
Closed
8 years ago
Adding flag to disable/enable binaries in CMakeLists.txt
Closed
9 years ago
Comments count
14
Profile thread safety?
Closed
9 years ago
Comments count
2
Can't get parasail_aligner to use > 1 thread
Closed
9 years ago
Comments count
1
Missing #include <string.h> in tests
Closed
9 years ago
Comments count
1
Documentation
Closed
9 years ago
Comments count
5
parasail results off by one error
Closed
8 years ago
Comments count
3
compare the results of parasail_aligner to USEARCH
Closed
8 years ago
Comments count
6
sample data sets for testing, using tests, and validation
Closed
8 years ago
Comments count
2
AVX2: no such instruction
Closed
9 years ago
Comments count
3
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