jeffdaily / parasail

Pairwise Sequence Alignment Library

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Assertion error

cnk113 opened this issue · comments

Hello,

I'm running into a parasail error using pychopper.
src/memory.c:245: parasail_result_new_trace: Assertion `b > 0' failed.
Any ideas on what the issue might be?

Could you please provide your inputs? Sequence A and B, open and extend penalties and/or match and mismatch penalties, substitution matrix used, etc. Also need the specific function you used for alignment. Thanks.

Sorry for the late reply, it actually seems to be an input error on pychopper which wraps around parasail.