inti

LLDMV1

inti

Config files for my GitHub profile.

Consultora_AcmeInnovation

uncertainty-toolbox

A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

ASE

Bayesian Analysis of Allelic Specific Expression

ComPhy

This project develop a software for PhyloStratigraphy analyse and extends the original methodology in several ways, .e.g., into comparison across species.

SnakeMake_rules

inti.github.io

Personal website

hugo_academic_site

gneiss

compositional data analysis and visualization toolbox

lnn

Local Nearest Neighbot Information Estimator

FORGE

This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details

int.github.io

taxonomizer

CMAP_GSA

This program allows to perform gene-set analyses with the results of the Connectivity Map project

badges

Readme Badges – Gotta catch 'em all

ggplot

ggplot for python

libplinkio

A Small C library for reading PLINK genotype files.

gwatools

gwatools

webpage

personal page

vagrantboxes

Here are some vagrant boxes I use for my development. Be welcomed to change or improve in any way!

chef_solo_pymc3

install pymc3 on a VM using chef_solo

python-data

Chef recipe to set up a data analysis-friendly Python virtual environment

chef_solo_numba

Chef_solo routine to install numba

jakevdp.github.io

Pythonic Perambulations website

pyhsmm

pybasicbayes

pymattutil

a few miscellaneous functions I've found useful

shogun

The Shogun Machine Learning Toolbox (Source Code)

Eigen3

a (possibly out-of-date) clone of Eigen3