Inti Pedroso's repositories

FORGE

This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details

ComPhy

This project develop a software for PhyloStratigraphy analyse and extends the original methodology in several ways, .e.g., into comparison across species.

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ASE

Bayesian Analysis of Allelic Specific Expression

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badges

Readme Badges – Gotta catch 'em all

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chef_solo_numba

Chef_solo routine to install numba

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chef_solo_pymc3

install pymc3 on a VM using chef_solo

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CMAP_GSA

This program allows to perform gene-set analyses with the results of the Connectivity Map project

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Eigen3

a (possibly out-of-date) clone of Eigen3

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ggplot

ggplot for python

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gneiss

compositional data analysis and visualization toolbox

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gwatools

gwatools

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inti

Config files for my GitHub profile.

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inti.github.io

Personal website

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jakevdp.github.io

Pythonic Perambulations website

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libplinkio

A Small C library for reading PLINK genotype files.

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lnn

Local Nearest Neighbot Information Estimator

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pymattutil

a few miscellaneous functions I've found useful

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python-data

Chef recipe to set up a data analysis-friendly Python virtual environment

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shogun

The Shogun Machine Learning Toolbox (Source Code)

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uncertainty-toolbox

A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

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vagrantboxes

Here are some vagrant boxes I use for my development. Be welcomed to change or improve in any way!

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webpage

personal page

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