inti

bonsai-dt

Programmable Decision Tree Framework

gsia

Gene Set Information Analysis

uncertainty-toolbox

Uncertainty Toolbox: a Python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

DTMM

Dirichlet-tree Multinomial Mixtures

dynamicTreeCut

Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.

google-research

Google Research

RFCDE

Random Forests for Conditional Density Estimation

cdetools

Tools for Conditional Density Estimates

cnet

Cutset networks implementation in C++

Obj1

Tesis_Methods_Obj1

JointEmbedding

spektral

Graph Neural Networks with Keras and Tensorflow 2.

graspologic

Python package for graph statistics

sktime

A unified framework for machine learning with time series

fastconsensus

Fast consensus clustering in networks

efficient-columnwise-correlation

Efficient ways to compute Pearson's correlation between columns of two matrices in various scientific computing languages

nmslib

Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

HDL

High-definition likelihood inference of genetic correlations (HDL)

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

JointSBM

poapy

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

alan

Alignment viewer for linux terminal

h5sparse

Scipy sparse matrix in HDF5

river

🌊 Online machine learning in Python

lnn

Local Nearest Neighbot Information Estimator

NetworkInference.jl

Methods for inferring undirected networks from data

quick_knn

LSH using Cosine and Jaccard Similarity

HAWK

Hitting associations with k-mers