Daniel Danis's repositories
hpo-toolkit
A toolkit for working with Human Phenotype Ontology in Python
c2p
Cancer data to GA4GH phenopacket
Cheatsheet
Useful stuff that is hard to remember
ddalg
Algorithms and data structures for my Python projects
ddconst
Constants used across multiple codebases
ddgen
Library of Python utilities that I needed so many times
ddplt
A package with code from my ML projects that has a potential of being reusable
curie-util
Crate for parsing IRIs
diachromatic
Differential analysis of chromatin interactions by capture
ERKER2Phenopackets
A pipeline of ERKER data into the phenopackets data structure.
Exomiser
A Tool to Annotate and Prioritize Exome Variants
fenominal-gui
Graphical User Interface for Fenominal
HBA-DEALS
https://hba-deals.readthedocs.io/en/latest/
hpo2robot
Generate ROBOT files to add terms to the HPO
HyperUtil
Hyper-useful Java utilities for bioinformatics projects
kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
linkml
Linked Open Data Modeling Language
ModularCliApp
An example of a CLI application run on a module path instead of class path.
obographs
Crate for parsing Obographs files
OffsetImbalanceAwareRandomForest
Offset and imbalance-aware random forest classifier
phenopacket-schema
Repository for the GA4GH inlined phenopacket schema
phenopacket-store
Collection of phenopackets
phenopacket-tools
Multimodule Java library/app that implements the "streamlined builder" code, v1 to v2 converter app
phenopacket-validator
Library and tools to help validate phenopackets
protobuf-maven-plugin
A simple and modern Maven plugin to generate Java/Kotlin sources from Protobuf and GRPC definitions.
PrototypeApp
Prototype modular Java 11+ app consisting of model, core, cli, and gui modules
PythonPackageBlueprint
Template for a Python package
vcf2omop
vcf2omop