Daniel Danis's repositories
SpliceAI
A deep learning-based tool to identify splice variants
ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
TranscriptPwmCounter
Count number of motifs in all transcripts of the human genome
nextflow-example
Example of nextflow pipeline
python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
ml-workshop-1-of-4
Introduction to Machine learning with Python, 4h interactive workshop
Algorithms
Reference implementation of selected algorithms for my most urgent needs
workshop-template
Rendering of the workshop-template site
jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
JannovarSieve
Select a few genes from Jannovar database and serialize them in order to get small database suitable for unit testing.
SplicingCalculator
Calculate splice donor and acceptor scores for all exons of the genome
SpringBootArchetype
Spring Boot app with some useful libraries for bioinformatics
monarch-app
Monarch web application and API