Hwang Lab

singlecell_tutorial

single cell sequencing analysis tutorial

TILs_Analysis

Pan-cancer tils analysis study by Hongming Xu

divine

Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data

tcga_tmb_prediction

TCGA BLCA tmb prediction by Hongming Xu

NTriPath

NTriPath Matlab code

rnaseq_workshop

Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis

HE_IHC_HN_analysis

Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma

tcga-prad-cslbp

TCGA prostate cancer Gleason score prediction using completed and statistical local binary patterns (Matlab/Python programs)

Deep_learning_WSI_tutorial

DGP_RF_WSL_TripletLoss

pathology_analysis_examples

tutorials for wsi analysis by Hongming Xu

apa_atingLab2019

DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex (2019 paper submission)

AML_biomarkers

tcga_stroma_prediction

wsitiler

Tools for dividing pathology whole slide images into tiles and save them as individual files.

Yonsei_gastric_cancer_32genes

binf_workshop_2018_01

Cleveland Clinic Bioinformatics Workshop January 2018

Stromal_ACTA2_ICI_Analysis

WSI_registration

2022_multiomic_GC

Multi-omics Reveals Microbiome, Host Gene Expression, and Immune Landscape in Gastric Carcinogenesis

CRISPinatoR_database

Database generating source codes for CRISPinatoR

hwanglab_2021_tigitCarT

TIGIT dysfunction role in CD19 CAR-T therapy for NHL

BayesianSNMTF

GC_ICI_response_prediction

istar

OptiType

Precision HLA typing from next-generation sequencing data

test