hwanglab / WSI_registration

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Registration of Whole Slide Images(WSIs)

Copy of Final_Manuscript_fig_1

1. Registering H&E and IHC Slides

How to run

you can answer target & source image path by following questions;

  • "1 for Dir or 0 for image path:" < you can run this code with multiple images (1) or single image (0) >
  • Enter a ref. image path: < target image path (e.g. H&E path), it should be a directory path containing reference images when you choose 1 above >
  • Enter a moving image path: < source image path (e.g. IHC path), it should be a directory path containing source images when you choose 1 above >
  • Enter an output path: < registered image path, it should be a directory path containing output images when you choose 1 above >

Inside code

  • prefix : output directory
  • fixed_path : target image path (e.g. H&E path)
  • moving_path : source image path (e.g. IHC path)

2. Coordinating Between Source and Target Slides

License

© This project is licensed under Apache License Version 2.0 - see the LICENSE file for details.

Contact

Reach out to the Hwang Lab.

hwanglab_mayo

About

License:Apache License 2.0


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