Brian Naughton's starred repositories
PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
AlphaFold3
Open source implementation of AlphaFold3
Polars-Cookbook
Polars Cookbook, Published by Packt
DiffDock-PP
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
protpardelle
Diffusion-based all-atom protein generative model.
alphafold_finetune
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
python-rust-fst
Python bindings for Rust's fst crate
DiffPepBuilder
Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
PD-1_Fab_Diffusion
PD-1 Targeted Antibody Discovery Using AI Protein Diffusion