hgbrian

RAGatouille

Easily use and train state of the art late-interaction retrieval methods (ColBERT) in any RAG pipeline. Designed for modularity and ease-of-use, backed by research.

usearch

Fast Open-Source Search & Clustering engine × for Vectors & 🔜 Strings × in C++, C, Python, JavaScript, Rust, Java, Objective-C, Swift, C#, GoLang, and Wolfram 🔍

rd-blender-docker

A collection of Docker containers for running Blender headless or distributed ✨

ProDy

A Python Package for Protein Dynamics Analysis

mace

MACE - Fast and accurate machine learning interatomic potentials with higher order equivariant message passing.

mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

tokengt

[NeurIPS'22] Tokenized Graph Transformer (TokenGT), in PyTorch

IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

www_personal

Personal Webpage

mhcflurry

Peptide-MHC I binding affinity prediction

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

Umol

Protein-ligand structure prediction

hotmetal

A tiny HTML generator 🔥🤘

ConPLex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

alphafill

AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

NoLabs

Open source biolab

PyRMD

AI-powered Virtual Screening

gpt_pdf_md

🚀 gpt_pdf_md: Convert PDF to Markdown with GPT-4V & more. Extract images, upload to Google Cloud, & generate Markdown with images. Python, GPT-4V Vision, Scala. Ideal for developers, researchers. PDF to Markdown, GPT-4V, image extraction, Python package

Schrodinger-Script

Some scripts to run Schrödinger jobs on HPC or localhost.

alphafold2rave

Sapiens

Sapiens is a human antibody language model based on BERT.

PubMed2PDF

A Python package to download full article PDFs from OA publications

HASTEN

Machine Learning Boosted Docking (HASTEN): Accelerate Structure-based Virtual Screening

protkit

A Unified Approach to Protein Engineering

tenforty

Python library to compute US federal taxes, and state taxes for some states.

tfold-release

TFold v1.0

FragFold

paperfetch

paperfetch can search papers from pubmed and download papers from sci-hub, it alse can get the reference and cited papers from a given article

8H9-Model-Essentials-Public

Pharmacokinetic Modeling and Optimization of Omburtamab (8H9) Delivered Through the CSF