Brian Naughton's repositories

Bayesian-Linear-Regression-Experiments

Bayesian Linear Regression with MCMC in IPython Notebook

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Doing_bayesian_data_analysis

Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

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nextflow_scripts

nextflow helper scripts

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nw_align

Needleman-Wunsch basic implementation

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d3recipes

d3 recipe-making app built on appengine

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dockatron

equibind wrapper

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dylos_logger

Log readings from a dylos particle counter to GCP (using a raspberry pi)

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geneticengineering

Tools and documents for genetic engineering

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iolt

internet of lab things

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smiles_to_properties

input SMILES, output molecular properties

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convnetjs

Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.

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deepbind

I have put my modified version of the deepbind code here.

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flask_heroku

An easy-to-use Flask template for Heroku.

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ipynb_experiments

ipynb experiments

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pydna

Classes and code for representing double stranded DNA and functions for simulating homologous recombination and Gibson assembly.

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pymc

PyMC version 3 (PyMC 2 is in branch 2.3)

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zip.js

JavaScript library to zip and unzip files

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