haesleinhuepf

python-basics

A fully AI-generated Jupyter book about Python basics

Tight-junctions-control-lumen-morphology-via-hydrostatic-pressure-and-junctional-tension

LLMs-from-scratch

Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step

cellSAM

Codebase for "A Foundation Model for Cell Segmentation"

gpu-python-tutorial

GPU Development in Python 101 tutorial

pyopencl_clahe

A PyopenCL kernel to apply CLAHE to 3D images

DL-MBL-2024

matmulfreellm

Implementation for MatMul-free LM.

pytorch_tutorial

pyTorch demo(s)

napari-easy-augment-batch-dl

A plugin for deep learning labeling, augmenting, training and predicting on 2d image sets. Well suited for training specialist networks using a small number of labels.

mini-pipelines

collection of scripts that chain together other scripts by preparing and processing/transforming data.

hypha-desktop

ndv

Simple, fast-loading, n-dimensional array viewer with minimal dependencies.

deconwolf

Deconvolution of widefield microscopy images and generation of point spread functions

denoising

Code base denoising

mistral-finetune

careamics

A deep-learning library for N2V and friends

napari-trackastra

napari plugin for trackastra

napari-skimage

A minimal dependency napari plugin giving access to scikit-image functions

techniques

Techniques for deep learning with satellite & aerial imagery

python_teaching

llama3.cp

Adapted version of llama3.np (NumPy) to a CuPy implementation for the Llama 3 model.

BIDS-training-2024

LLM_teaching

teaching on large language models

lux

Automatically visualize your pandas dataframe via a single print! 📊 💡

HyperCoast

A Python package for visualizing and analyzing hyperspectral data in coastal regions

simple-rag

An implementation of retrieval-augmented-generation (RAG) using numpy and OpenAI embeddings, with no clutter, for academic purposes

human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

NeubiasPasteur2023_AdvancedCellPose

tutorial for running CellPose advanced functions

droplet-sorter-master

Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) Droplet Sorter (FADS).