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Bio-image Analysis group at the DFG Cluster of Excellence "Physics of Life" at TU Dresden (BiAPoL)

Bio-image Analysis group at the DFG Cluster of Excellence "Physics of Life" at TU Dresden

BiAPoL

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Location:Dresden

Home Page:https://physics-of-life.tu-dresden.de/bia

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Bio-image Analysis group at the DFG Cluster of Excellence "Physics of Life" at TU Dresden's repositories

Bio-image_Analysis_with_Python

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:183Issues:19Issues:10

napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:65Issues:8Issues:124

PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis

PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track

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Quantitative_Bio_Image_Analysis_with_Python_2022

This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.

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Image-data-science-with-Python-and-Napari-EPFL2022

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blog

Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.

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napari-crop

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PoL-BioImage-Analysis-TS-Early-Career-Track

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DIGS-BB_LM_Course_Bio-Image_Analysis_2022

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HIP_Introduction_to_Napari_and_image_processing_with_Python_2022

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napari-polo

A napari Plugin for Polarised Light Microscopy Analysis

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Annotation-in-3D-blogpost

This repository hosts a proposal for an annotation template for community annotations

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biaplotter

A base napari plotter widget for interactive plotting

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hackathon-london-2022-11

Collection of code from the CLIJ-CZI-EOSS hackathon at the Francis Crick Institute in Londin

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:3Issues:5Issues:0

napari-clusters-plotter-example-notebooks

This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage

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biapol-taurus

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Fileserver-to-HPC

Monitors a folder and automatically processes new subdirectories on an HPC cluster.

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microscope-gym

An open python smart-microscopy API

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.github

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guanine-crystal-analysis

A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye

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HIP_Summer_School_Image_Data_Visualization_101

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biapol.github.io

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blog-1

Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.

License:CC-BY-4.0Stargazers:0Issues:1Issues:0

DIGS-BB_LM_Course_Bio-Image_Analysis_2023

This repository contains a collection of Python Jupyter notebooks for a one afternoon course in Image Analysis using Python and Napari.

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:0Issues:5Issues:3

docker-example-omero

OMERO Docker compose example

License:BSD-2-ClauseStargazers:0Issues:0Issues:0

Pasteur-NEUBIAS-training-school-on-Bioimage-Analysis

Training school focused on Bioimage Analysis. Home page: https://research.pasteur.fr/en/course/neubias-pasteur-course-on-bioimage-analysis/

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Rescaling-blogpost

This repository hosts a jupyter notebook and a minimal example for the rescaling-blogpost

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scripts

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Segmentation-quality-assurance-blogpost

This repository hosts jupyter notebooks, images and videos for the segmentation quality assurance blog post.

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stardist-envs

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