haesleinhuepf

stackview

Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

bia-bob

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

apoc

Accelerated Pixel and Object Classifiers (APOC)

git-bob

git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.

napari-assistant

napari-workflow-optimizer

Optimize image processing workflows in napari

the-segmentation-game

Gamified image segmentation quality estimation

napari-tools-menu

napari-workflow-inspector

Inspect relationships between napari-plugins in active workflows.

unprompted

An AI-assistant which gives unprompted feedback about code helping you to write better code in Jupyter notebooks

outlook-bob

outlook-bob is an LLM-based assistant for answering emails. It uses local LLMs using ollama for optimal privacy.

napari-time-slicer

A meta plugin for processing timelapse data timepoint by timepoint in napari

git-bob-playground

pdf2gif

screenshot-question-answerer

haesleinhuepf.github.io

cellpose

a generalist algorithm for cellular segmentation

cicd-demo-dataweek2025

This repository serves as playground for the DevOps workshop at DataWeek Leipzig 2025

clipboard-summarizer

Summarize clipboard contents with a single keyboard shortcut

dataweek2025test

famous_computer_science_quotes

In this Jupyter Book we collect famous quotes from computer scientists. The repository serves training purposes at the DataWeek Leipzig 2024: We learn how to fork, send pull-requests and merge contents on github.com.

git-bob-playground2

git-demo-dataweek-2025

I2K2024-MTIWorkshop

Material for the I2K 2024 "Multiplexed tissue imaging: tools and approaches" workshop

ipylisten

napari-tabu

skills-review-pull-requests

My clone repository

test

test2