haesleinhuepf

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

stackview

Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

blablado

blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.

bia-bob

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

devbio-napari

napari-process-points-and-surfaces

Process and analyze surfaces using vedo in napari.

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

story-writer

An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a prompt and writes them into a PDF.

human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

napari-folder-browser

prompting-pptx

Generate PowerPoint files using chatGPT and Dall-E

simple-rag

An implementation of retrieval-augmented-generation (RAG) using numpy and OpenAI embeddings, with no clutter, for academic purposes

spheri

A library for feature extraction from 3D label images

haesleinhuepf.github.io

SAMJ-IJ

An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.

awesome-mlss

List of summer schools in machine learning + related fields across the globe

basaran

Basaran is an open-source alternative to the OpenAI text completion API. It provides a compatible streaming API for your Hugging Face Transformers-based text generation models.

bia-explorer

Python package for exploring BIA data

BIDS-lecture-2024

Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024

blog

famous_computer_science_quotes

In this Jupyter Book we collect famous quotes from computer scientists. The repository serves training purposes at the DataWeek Leipzig 2024: We learn how to fork, send pull-requests and merge contents on github.com.

geo-chat-tutorial

Using ChatGPT Function Caling to execute geospatial functions

git-demo-dataweek2024

This repository serves as playground for the DataWeek Leipzig 2024

intel-extension-for-transformers

⚡ Build your chatbot within minutes on your favorite device; offer SOTA compression techniques for LLMs; run LLMs efficiently on Intel Platforms⚡

jupyter-book

Create beautiful, publication-quality books and documents from computational content.

jupyter-book-template

Cookiecutter template for a simple jupyter book

napari-nyxus

napari-stable-diffusion

A stable diffusion demo for napari

UC2-GIT

Respository for Open-Science modular microscope system.