ggirelli / iFISH-probe-design

iFISH Probe Design: a Python3 package to build iFISH probes.

https://ggirelli.github.io/iFISH-probe-design/

ggirelli/iFISH-probe-design Issues

Add proper typing for mypy to check
Updated 3 years ago
Add unit test and test via GitHub actions
Updated 3 years ago
Add option to skip plotting when querying the database
Updated 3 years ago
Clarify --min-dist option effect
Updated 3 years ago
Allow to enforce a minimum distance of interest between consecutive oligos when designing a probe
Updated 3 years ago
Switch from matplotlib to plotly for plot generation
Updated 3 years ago
Add link to corresponding help pages in query, candidate,... pages.
Closed 3 years ago1
Show breadcrumbs in a more consistent manner.
Closed 3 years ago1
Redirect back to interface if query searched is not found.
Closed 3 years ago1
Let GUI dynamically change feature list when a different database is selected
Closed 3 years ago1
Clarify that genome details are facultative
Closed 3 years ago2
Add option to design a probe using the whole database feature as a window
Closed 3 years ago2
Allow user to customize chromosome label in probe query script
Closed 3 years ago4
Allow to generate largest probe possible when not enough oligos are found
Closed 3 years ago1
TypeError: '<' not supported between instances of 'str' and 'int'
Closed 5 years ago1
ifpd_serve: high cpu usage when idle
Closed 5 years ago1
ifpd_serve: "ERROR 500: nothing here, sorry :("
Closed 5 years ago5
ifpd_mkdb: SyntaxError: invalid syntax
Closed 5 years ago4
Add disclaimer when no database are found.
Closed 5 years ago
Move X to close bookmark alert to the left.
Closed 5 years ago
Support for databases with overlapping oligos
Closed 5 years ago
Specifics for features missing from fprode_dbquery help page.
Closed 5 years ago
Support for databases with variable oligo length
Closed 6 years ago
Support for databases with sequence included or specified reference genome
Closed 6 years ago
Support for OligoMiner database
Closed 6 years ago