ggirelli / pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.

ggirelli/pygpseq Issues

URGENT: add compatibility with matplotlib>=3.0
Updated 6 years ago
Better error report and format check in fromfish_merge
Updated 6 years ago
DFE can merge nuclei, add watershed option in tiff_auto3dseg
Updated 6 years ago1
Add flexible nuclear selection tool (aim at sub-population selection).
Updated 6 years ago1
Crashed for unknown reasons
Updated 6 years ago1
Re-factor for better documentation with python `help()`.
Closed 6 years ago1
Standardize XYZ coordinate noation
Closed 6 years ago1
G1 filter in `gpseq_fromfish`
Closed 6 years ago1
Clean `tools.binarization` module.
Closed 6 years ago1
Support for 2D fields in czi/nd2_to_tiff
Closed 6 years ago2
In gpseq_anim calculate statistics of signal channel per nucleus.
Updated 6 years ago
Retain nd2 metadata when converting to tiff in `nd2_to_tiff`.
Closed 6 years ago1
In tiff_auto3dseg use `gcc.export_settings`.
Closed 6 years ago1
Additional options to `tiff_findoof`
Closed 6 years ago3
Missing dependencies to czifile and cython packages in setup.py
Closed 6 years ago1
In tiff_splitt, -I has the opposite behaviour from expected.
Closed 6 years ago1
Undocumented warnings
Closed 6 years ago1
warnings from gpseq_fromfish
Closed 6 years ago1
double negations are hard for non-super-humans
Closed 6 years ago1
Better error message when only one channel tiff is missing
Closed 6 years ago1
gpseq_fromfish got stuck at a corrupt image
Closed 6 years ago1
Initial Update
Closed 8 years ago