Gabriele Girelli's repositories
fish-probe-design
Suit to select set of oligomers as FISH probes from databases of locus-specific hybridizing oligomers.
GPSeq-source-data
Source data for GPSeq manuscript.
gpseqc-snakemake
Snakemake workflow to run GPSeqC pipeline.
SpectraScope
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
bed-tools-gg
A suite of scripts to manage bedfiles.
bioinformatics-exercise
Bioinformatics exercises
biomart
Python biomart API
chromflock-scripts
Scripts to extend the chromflock tool.
covid19Italy
Italy covid19 data
dotter2gpseq
Re-segment nuclei and obtain FISH dots centrality values.
edit-distance-gg
A set of functions to calculate the edit distance between two lists of elements.
fasta-tools-gg
A few scripts to manage fasta files.
gg-shiny
Some shiny apps...
ggc
Python package with basic methods, for common usage across packages.
gpseq-seq-gg
GPSeq sequencing data analysis pipeline
gtf-tools-gg
A few scripts to manage gtf files.
iFISH-singleLocus-analysis
Pipeline for iFISH single locus data analysis
nd2reader
Pure Python library for reading NIS Elements ND2 images and metadata
oligo-picker
Pipeline for identification of FISHing location-specific oligonucleotide sequences.
pygpseq-scripts
Scripts to be integrated in the pygpseq package.
seq-lib-gg
Base librarys for sequencing data analysis.
tiff-tools-gg
A few scripts to manage tiff images.
wave2color
How to get a color from a wavelength (in the visible range)