Gerben Voshol's repositories
doctxt
Simple docx to txt converter written in C.
wkgtkprinter
HTML to PDF converter (C Library) using WebkitGtk (similar to wkhtmltopdf, but without the Qt part)
Hidden-Markov-Model-Toolkit
Simple discrete (DHMM) and continuous Hidden Markov Model (CHMM) library
notes
A note-taking system.
utils
my c utils, coding for fun
md4c
C Markdown parser. Fast. SAX-like interface. Compliant to CommonMark specification.
h.h
Multi-platform, single-file, header-only, C / C++11 include for bootstrapping new projects.
bcfanno
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
miller
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
lesv
High accuracy structural variations caller for Nanopore noisy long reads
Zettelkasten
An implementation of a Zettelkasten for terminals.
deSAMBA
deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
kallisto
A reimplementation of (most of) kallisto, an RNA sequence quantification tool. Worked on as a group project for stat590
pdqsort
Public Domain QuickSORT implementation in C
seqio
seqio - A C Package for Performing Sequence File I/O
cBio
cBio is a free Open Source extended software analysis library and package originally based on EMBOSS
VirMet
Set of tools for viral metagenomics.
GenomeTester4
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
boogiesync-tablet
A userspace linux driver (written in C using libevdev and libbluetooth) for using the Boogie Board Sync 9.7 as a tablet input device
whereami
Locate the current executable and the current module/library on the file system
PasswordManager
PasswordManager is password store tool.
wkhtmltopdf
Convert HTML to PDF using Webkit (QtWebKit)
sqlite
Unofficial git mirror of SQLite sources (see link for build instructions)
unqlite
An Embedded NoSQL, Transactional Database Engine
bri
Bam Read Index - Extract alignments from a bam file by readname
sds
Simple Dynamic Strings library for C
loadlibrary
Porting Windows Dynamic Link Libraries to Linux
lvgl
Powerful and easy-to-use embedded GUI with many widgets, advanced visual effects (opacity, antialiasing, animations) and low memory requirements (16K RAM, 64K Flash).
miniz
miniz: Single C source file zlib-replacement library, originally from code.google.com/p/miniz
lz4
Extremely Fast Compression algorithm