gerbenvoshol

10x-manipulation-tools

Some internal tools for manipulating FASTQ and BAM files with barcoded short reads

acc2tax

Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings

cloneit

github repo for Bioinformatics. 1998 Jun;14(5):465-6. CloneIt: finding cloning strategies, in-frame deletions and frameshifts.

cmph

C Minimal Perfect Hashing Library

cxlsx_to_csv

Convert XLSX (Excel 2007) files to CSV

data-structures-c

A collection of algorithms for data structure manipulation in C

ebnn

Header-only C library for Binary Neural Network Feedforward Inference (targeting small devices)

fann

Official github repository for Fast Artificial Neural Network Library (FANN)

FlowBio

A fast, easy way to present complex bioinformatics pipelines to biologists

hash

C hash implementation based on khash

hershey

Tools for the Hershey Vector Font

hpg-variant

A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

kann

A lightweight C library for artificial neural networks

libintrusive

Intrusive data structures for C

mph

Perfect Hash Functions

mrrcrypt

A command line encryption/decryption tool using an adaptive mirror field algorithm.

ncbi-blast-legacy

legacy blast

predictions

qsort

Quicksort implemented as a C macro

qstats

Quick and dirty statistics tool for the UNIX pipeline

ratt

Rapid Annotation Transfer Tool

RGAAT

Reference based genome assembly and annotation tool for new genome and known genome upgrade

sam_realigner

Realigns SAM/BAM/CRAM files to fix pairwise vs multiple alignment issues.

sann

Simply feedforward neural network

stdstring.h

C string utils library (STB style, header-only).

SVD_C

Singular Value Decomposition in C

topaz

High-performance protein homology search using asymmetric suffix array neighbourhood search

tsv2excel

tsv2excel is a lightwight tool to convert tsv (plain or gziped) files to a excel file.

vcf-hack

Hack-y C programs for modifying VCF files

vcf-slim

Light weight VCF annotation and filtering