gerbenvoshol

bcbio_validation_workflows

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

bloom

Bloom filter implementation

gff

GFF reader and writer in C.

mic

A simple and easy-to-use library to build pipelines in C

seqcode

Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

ntHash

Fast hash function for DNA sequences

exercises

qiime2

Singularity Recipe for QIIME 2

cheatsheets

My cheatsheets

htslib

C library for high-throughput sequencing data formats

compGenomRData

Data for book

Krona

Interactively explore metagenomes and more from a web browser.

sickle

Windowed Adaptive Trimming for fastq files using quality (NOTE: This is a BETA version with multithreading support do NOT use in production!!!)

libbios

C library of generic data structures and bioinformatics algorithms.

Color-Toolkit

simple color (C/C++) distance Toolkit with support for color conversion (RGB, XYZ, Lab) and color distance calculations (CIE76, CIE94 and CIEDE200)

cgranges

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

libgtftk

gtftk C Library and program

PRCx

PRofile Comparer eXtended (PRCx) is a stand-alone program for scoring and aligning profile hidden Markov models (HMMs) of protein families

example-htslib

Example autoconf-built program that uses HTSlib

GBParsy

GBParsy is a C library of functions that parses the GenBank flatfile

SecLists

SecLists is the security tester's companion. It's a collection of multiple types of lists used during security assessments, collected in one place. List types include usernames, passwords, URLs, sensitive data patterns, fuzzing payloads, web shells, and many more.

stock-prediction-ai

libBigWig

A C library for handling bigWig files

MultiMarkdown-6

Lightweight markup processor to produce HTML, LaTeX, and more.

htmldoc

HTML Conversion Software

BAdabouM

BAdabouM is a genomic structural variations discovery tool

lofreq

LoFreq Star: Sensitive variant calling from sequencing data

prospr

ProSPr: Protein Structure Prediction

doctxt

Simple docx to txt converter written in C.