Frédéric Mahé (frederic-mahe)

frederic-mahe

Geek Repo

Company:Cirad

Location:Montpellier, France

Home Page:http://mahé.org/

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Frédéric Mahé's repositories

pairdist

Creates a neighbor-joining tree from a set of sequences, using maximum likelihood distances based on pairwise sequence alignment

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bioinformatics-scripts

A collection of useful bioinformatics scripts

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wavebird-reversing

Reverse-engineering the WaveBird protocol for the betterment of mankind

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Amplicon_Recipes

Recipes for data analysis of amplicon sequencing data

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Another-World-Bytecode-Interpreter

"Fabother World" an interpreter for Another World (Out of this world).

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bash-emacs-editing-mode-cheat-sheet

Bash has two input modes - emacs and vi. This is emacs input/editing mode keyboard shortcut cheat sheet.

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Bayexer

A Demultiplexing Tool for Illumina sequencers

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biom-format

The Biological Observation Matrix (BIOM) Format Project

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bioman

manual pages for the bioinformatician

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bioplib

The bioplib library

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CONCOCT

Clustering cONtigs with COverage and ComposiTion

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cutadapt

cutadapt removes adapter sequences from sequencing reads

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dropClust

Clustering of ultra-large scRNA-seq data

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ESS

Git development branch

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eukref

18S curation pipeline

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fastqe

FASTQ sequence quality visualisation with Emoji

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hiseq-16s-pipeline

Process Illumina Hi/Mi-Seq 16S amplicons on the really big computer at the University of Florida

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khmer

in-memory k-mer counting

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liquidprompt

A full-featured & carefully designed adaptive prompt for Bash & Zsh

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MITObim

MITObim - mitochondrial baiting and iterative mapping

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pandaseq

PAired-eND Assembler for DNA sequences

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qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

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reveal.js

The HTML Presentation Framework

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SNES

SNES Assembly Programming

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swarm_breaker2

Swarm breaker companion script for swarm.

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TAXAassign

Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy

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tcoffee

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

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TOGGLE-DEV

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis (development repository)

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ym2151-decap

Silicon die analysis of the Yamaha YM2151 FM Synthesis chip

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