Dear Biologist, have you ever dream of using the whole power of those numerous NGS tools that your bioinformatician colleagues use through this awful list of command line ?
Dear Bioinformatician, have you ever guess how to design really fastly a new NGS pipeline without having to retype again dozens of code lines to readapt your scripts or starting from scratch ?
So, be Happy ! TOGGLE is for you !!
TOGGLE (TOolbox for Generic nGs anaLysEs) is a suite of 19 packages and more than 110 modules able to manage a large set of NGS softwares and utilities to easily design pipelines able to handle hundreds of samples. Moreover, TOGGLE offers an easy way to manipulate the various options of the different softwares through the pipelines in using a single basic configuration file, that can be changed for each assay without having to change the code itself.
More information on our website
- Follow the installation instructions
- You can find a detailed Manual here
- You can find detailed known issues
- Current Release Notes
You are currently on the production version, i.e. the last stable one. A more advanced version, the dev version is available on the TOGGLE-DEV gitHub
- Licencied under CeCill-C (http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html) and GPLv3
- Intellectual property belongs to IRD, CIRAD, ADNid and SouthGreen development platform
- Written by Cecile Monat, Christine Tranchant, Ayite Kougbeadjo, Cedric Farcy, Mawusse Agbessi, Enrique Ortega-Abboud, Sébastien Ravel, Julie Orjuela-Bouniol, Souhila Amanzougarene, Gauthier Sarah, Marilyne Summo, and Francois Sabot
- Copyright 2014-2017
For bug tracking purpose you can use the GitHub or questions about TOGGLE, you can contact the developers at toggle@ird.fr
TOGGLE: Toolbox for generic NGS analyses. Cécile Monat, Christine Tranchant-Dubreuil, Ayité Kougbeadjo, Cédric Farcy, Enrique Ortega-Abboud, Souhila Amanzougarene, Sébastien Ravel, Mawussé Agbessi, Julie Orjuela-Bouniol, Maryline Summo and François Sabot.
BMC Bioinformatics 2015, 16:374 doi:10.1186/s12859-015-0795-6