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Frédéric Mahé (frederic-mahe)

frederic-mahe

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Company:Cirad

Location:Montpellier, France

Home Page:http://mahé.org/

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Frédéric Mahé's starred repositories

MiscMetabar

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

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community-generator

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Norwegian-marine-samples-Leray-primers

Norwegian marine samples COI diversity

License:GPL-3.0Stargazers:1Issues:0Issues:0

Phytovirus

Analyses des données projet phytovirus

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oligotyping

Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

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metabaRpipe

an R package to process raw metabarcoding data into a phyloseq object using a single command

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counting-in-cpp

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GameShell

a game to learn (or teach) how to use standard commands in a Unix shell

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compairr

Comparison of Adaptive Immune Receptor Repertoires

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cppinclude

Tool for analyzing includes in C++

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seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

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Analysing_clustertool_swarm

Internship 2019 projects of Milena Koenigshofen at CIRAD, Montpellier Supervisor: Frédéric Mahé

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CppCoreGuidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

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ggforce

Accelerating ggplot2

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simka

Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

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PHD_Project_Scripts

Here i add all scripts of my PHD thesis

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R_tutorials

Tutorials for R

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TOGGLE

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

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SuperFXinVerilog

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tensorflow

An Open Source Machine Learning Framework for Everyone

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pr2database

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

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Hardware-Target-Game-Database

Flash-cart optimized file and folder layouts.

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tesseract

Tesseract Open Source OCR Engine (main repository)

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metakallisto

Using kallisto for metagenomic analysis

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anvio

An analysis and visualization platform for 'omics data

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genesis

A library for working with phylogenetic and population genetic data.

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pipeline

EukRef curation pipeline

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swarmwrapper

Wraps swarm to perform pooled dereplication

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mooneye-gb

A Game Boy research project and emulator written in Rust

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ggplot2-exts.github.io

A list of ggplot2 extensions

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