Francois Serra's repositories
slurm_utils
few script to run jobs and monitor
ensembl-compara
The Ensembl Compara Perl API and SQL schema
EpigenomeAnalysisTutorial-2020
This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
FindingChromatinLoops
Finding chromatin loops with Homer and HiCCUPS.
github-markdown-toc
Easy TOC creation for GitHub README.md
parallel_sequencing_lives
Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.
PhD-thesis
My PhD thesis dissertation: Informational, Ecological and System Approaches for Complete Genome Analysis
python-coveralls
Python API for http://coveralls.io
RustyChrom
sample split by restriction-enzyme in Rust
Same-Size-K-Means
A k-means variation that produces clusters of the same size utilizing the scikit-learn API and related utilities
simple3D
simple 3D modeling using spatial restraints
SnapFlow
simple workflow manager in python
treematcher
Search flexible patterns within tree structures using regular expression like syntax.
VRE_tool_jsons
VRE-tool integration