fransua

slurm_utils

few script to run jobs and monitor

ecolopy

package to test untb in ecosystems

gsea

TADbit

ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

prognosTF

SerUtils

A bit of everything for everyday use in bioinformatics

3DAROC

#DAROC Course, starting in 2016

Anchor

This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge

Bojos_supercomputacio

config-emacs

course

ensembl-compara

The Ensembl Compara Perl API and SQL schema

EpigenomeAnalysisTutorial-2020

This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression

FindingChromatinLoops

Finding chromatin loops with Homer and HiCCUPS.

github-markdown-toc

Easy TOC creation for GitHub README.md

parallel_sequencing_lives

Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.

PhD-thesis

My PhD thesis dissertation: Informational, Ecological and System Approaches for Complete Genome Analysis

py-sha256

experimental pure python implementation of sha256 algorithm

pyGAM

[HELP REQUESTED] Generalized Additive Models in Python

pySankey

create sankey diagrams with matplotlib

python-coveralls

Python API for http://coveralls.io

RustyChrom

sample split by restriction-enzyme in Rust

Same-Size-K-Means

A k-means variation that produces clusters of the same size utilizing the scikit-learn API and related utilities

scVI-3D

SnapFlow

simple workflow manager in python

SNPsplit

Allele-specific alignment sorting

tree_formats

treematcher

Search flexible patterns within tree structures using regular expression like syntax.

VRE_tool_jsons

VRE-tool integration