Multiscale Genomics's repositories
mg-tool-api
This library outlines the main structures related to the tools section of the VRE.
mg-process-fastq
Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)
mg-process-test
Example pipelines file that is ready to run in the VRE matching the code in the HowTo documentation
mg-rest-adjacency
RESTful API providing adjacency data stored in hdf5 files that have been generated with the scripts in the mg-storage-hdf5 / mg-process-fastq repo
pydockdna_tool
VRE pyDockDNA tool manager
DNAflexsuite
A suite of tools to predict DNA flexibility from sequence at different resolutions
mg-dm-api
API for the management of file locations and users within the MuG VRE
mg-process-benchmark
Wrappers around mg Tools that have been written in Luigi so that they can be run on alternative cluster technologies to aid in benchmarking the pipelines
mg-process-files
Scripts for processing bed, wig and tsv files ready for indexing for the RESTful servers.
mg-rest-dm
RESTful access to the DMP
mg-rest-ge
REST API for gene expression data generated as part of teh MuG project.
VRE_tool_jsons
VRE-tool integration
Bam_QC
Wrapper for BamQC
DNAFlexBrowser
The DNA Flex Browser lets you navigate through sequence-dependent DNA flexibility data.
mg-common
Common functions that are not specific to a given workflow or tool
mg-docs
Documentation for developers creating tools and pipelines for the MuG VRE
mg-misc-scripts
Miscellaneous scripts for mg-process-fastq
mg-process-macs2
Pipeline wrapping the MACS2 tool for the MuG Tool Developers API Workshop
mg-rest-3d
RESTful API for TADbit generated 3D coordinates
mg-rest-file
Data retrieval of files or sections of files
mg-rest-service
Service to monitor REST live services
mg-rest-tad
RESTful API to TAD predictions
mg-rest-util
Util functions common to all rest services
mugin
The MuG Information Network visualises information flow in Multiscale Complex Genomics.
Multiscale-Genomics.github.io
Github.io Jekyll site for the Multiscal Genomics repository
VRE_data_api
Simple API remotely accessing the VRE user files