4DGenome's repositories
Chromosomal-Conformation-Course
Bioinformatic material related to the course
parallel_sequencing_lives
Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
binless
Resolution-independent normalization of Hi-C data
hicfeatures
Genomic features for Hi-C experiments
TADkit
3D Genome Browser